Bioinformatics Equipment

2025 KLSIC

Dell PrecisionTM Workstation 530 (Windows 2000 Pro. ® )

• Duel Intel® XeonTM Processors @ 2.4 GHz
• 4 GB Rambus® RIMM®
• Video Conferencing

2027 KLSIC

Dell PrecisionTM Workstation 330 (Windows 2000 Pro. ®)

• Dual Intel® Pentium® IV Processor @ 2.4 GHz
• 1 GB Rambus® RIMM®
  
• DVD Combo Drive

Dell PrecisionTM Workstation 450n (RedHat Linux 9.0®)

• Intel® Pentium® IV Processor @ 2.8 GHz
• 1 GB Rambus® RIMM®

Dell PrecisionTM Workstation 450n (RedHat Linux 9.0®)

• Intel® Pentium® IV Processor @ 2.8 GHz
• 1 GB Rambus® RIMM®

Software

Affymetrix®

• Gene Chip Operating Software (GCOS)TM
  • GCOS AdministratorTM
  • GCOS ManagerTM
  • GCOS Data Transfer Tool TM
• Data Mining ToolTM

BLAST® Server

• BLAST® (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. The BLAST programs have been designed for speed, with a minimal sacrifice of sensitivity to distant sequence relationships. The scores assigned in a BLAST search have a well-defined statistical interpretation, making real matches easier to distinguish from random background hits. BLAST uses a heuristic algorithm that seeks local as opposed to global alignments and is therefore able to detect relationships among sequences that share only isolated regions of similarity
• For more information on BLAST servers visit: http://www.ncbi.nlm.nih.gov/BLAST/blast_overview.html

BLAT®Server

• finding sequences of minimum 40 bases with 95% or greater similarity on entire genome. BLAT on proteins finds sequences of 80% or greater similarity of length of 20 amino acids or more.

DS_Gene®

• Multiple sequence alignment and analysis
• Sequence editing and comparison
• Fragment assembly
• Restriction and proteolyc enzyme mapping
• Primer analysis to predict PCR and sequencing primers and hybridization probes
• Pattern, motif and gene finding

GeneSpring®

• Microarray data analysis
• Gene lists
• Functional classification
• Regulatory sequences
• Clusters
• Pathways

StatMost®

• Statistical analysis
• Graphical information

MathWorks®:

• MATLAB ( RedHat Linux ® version )
• Neural Network Toolbox
• Statistics Toolbox
• Fuzzy Logic Toolbox
• Image Processing Toolbox